Tree @master (Download .tar.gz)
History of
bh20seqanalyzer
@master
git clone https://klaus.systemreboot.net/bh20-seq-resource/
- Support uploading new metadata only Peter Amstutz 5 years ago
- Valid uploads with sequence_label in PubSeq replaces old one. Peter Amstutz 5 years ago
- Make it so "pangenome analysis" only runs collect-seqs. Peter Amstutz 5 years ago
- added control (locally and in the validation) that sample_id has to be the same in the metadata and in the FASTA header #103 AndreaGuarracino 5 years ago
- Update links to reflect latest workflow Peter Amstutz 5 years ago
- Consolidate steps to scale graph generation workflow Peter Amstutz 5 years ago
- Make sure move_fastq_to_fasta_results gets everything Peter Amstutz 5 years ago
- Add "validated" and "running workflows" tables to status Peter Amstutz 5 years ago
- Catch exceptions Peter Amstutz 5 years ago
- Refactor analysis code into a class Peter Amstutz 5 years ago
- Add --revalidate and fix checking/updating properties. Peter Amstutz 5 years ago
- Get count from arvados Peter Amstutz 5 years ago
- --print-status=html creates html report Peter Amstutz 5 years ago
- Add bh20-seq-analyzer --print-status Peter Amstutz 5 years ago
- A little more logging Peter Amstutz 5 years ago
- Add --no-start-analysis Peter Amstutz 5 years ago
- Adjust QC filter and relabel output sequence with sample_id Peter Amstutz 5 years ago
- Better invalid sequence QC handling Peter Amstutz 5 years ago
- Handle upload & assembly of gzipped, paired-end fastq Peter Amstutz 5 years ago
- Can have list of sequence labels to exclude from combined fasta Peter Amstutz 5 years ago
- Switch fasta identifiers to use a real working URL Peter Amstutz 5 years ago
- Sort input to hopefully get container reuse Peter Amstutz 5 years ago
- Remove debug flag from workflow submit Peter Amstutz 5 years ago
- Increase ram requirement for minimap2 Peter Amstutz 6 years ago
- Add __init__.py and fix imports Peter Amstutz 6 years ago
- Propagating metadata to output works now. Peter Amstutz 6 years ago
- Improve fasta/fastq QC Peter Amstutz 6 years ago
- Fix swapped fasta/fastq Peter Amstutz 6 years ago
- Fix up fasta/fastq validation Peter Amstutz 6 years ago
- Validate & propagate metadata Peter Amstutz 6 years ago