History of workflows @master git clone https://klaus.systemreboot.net/bh20-seq-resource/

• Restored tools submodule Pjotr Prins 5 years ago
• Moving tools out of submodules (sorry!) Pjotr Prins 5 years ago
• Add phylogeny workflow Njagi Mwaniki 5 years ago
• GenBank: Fix normalization and depth differences with original records Pjotr Prins 5 years ago
• Set JSON indentation Pjotr Prins 5 years ago
• Get correct GenBank ID with version, see #122 Pjotr Prins 5 years ago
• FASTA file should not have leading space Pjotr Prins 5 years ago
• Allow for xml and xml.gz files Pjotr Prins 5 years ago
• cleaned utils.py AndreaGuarracino 5 years ago
• Pubseq fetch: sometimes a request times out. So repeat with intervals. Pjotr Prins 5 years ago
• cleaning update-from-genbank.py; removed unused import from genbank-fetch-ids.py AndreaGuarracino 5 years ago
• cleaning genbank-fetch-ids.py AndreaGuarracino 5 years ago
• Fetching fixes Pjotr Prins 5 years ago
• Add option for fetching fasta Pjotr Prins 5 years ago
• fetch: do a straight dump of the original record Pjotr Prins 5 years ago
• fetches original metadata from PubSeq/Arvados Pjotr Prins 5 years ago
• API: fix returned record to include original metadata Pjotr Prins 5 years ago
• Rename Pjotr Prins 5 years ago
• mapping: no longer requires specimen file for genbank output Pjotr Prins 5 years ago
• Removing refs. No point in guessing terms Pjotr Prins 5 years ago
• mapping sample_species using regex Pjotr Prins 5 years ago
• Started on normalization Pjotr Prins 5 years ago
• genbank: specimen source Pjotr Prins 5 years ago
• genbank: more or less complete. Need to add collection method Pjotr Prins 5 years ago
• genbank: deal with host, sex and age Pjotr Prins 5 years ago
• genbank: technology parsing Pjotr Prins 5 years ago
• genbank: submitter info Pjotr Prins 5 years ago
• genbank: get authors Pjotr Prins 5 years ago
• Move reference code to different file so it does not break python Pjotr Prins 5 years ago
• GenBank date parsing Pjotr Prins 5 years ago