Tree @master (Download .tar.gz)
History of
workflows
@master
git clone https://klaus.systemreboot.net/bh20-seq-resource/
- Restored tools submodule Pjotr Prins 5 years ago
- Moving tools out of submodules (sorry!) Pjotr Prins 5 years ago
- Add phylogeny workflow Njagi Mwaniki 5 years ago
- GenBank: Fix normalization and depth differences with original records Pjotr Prins 5 years ago
- Set JSON indentation Pjotr Prins 5 years ago
- Get correct GenBank ID with version, see #122 Pjotr Prins 5 years ago
- FASTA file should not have leading space Pjotr Prins 5 years ago
- Allow for xml and xml.gz files Pjotr Prins 5 years ago
- cleaned utils.py AndreaGuarracino 5 years ago
- Pubseq fetch: sometimes a request times out. So repeat with intervals. Pjotr Prins 5 years ago
- cleaning update-from-genbank.py; removed unused import from genbank-fetch-ids.py AndreaGuarracino 5 years ago
- cleaning genbank-fetch-ids.py AndreaGuarracino 5 years ago
- Fetching fixes Pjotr Prins 5 years ago
- Add option for fetching fasta Pjotr Prins 5 years ago
- fetch: do a straight dump of the original record Pjotr Prins 5 years ago
- fetches original metadata from PubSeq/Arvados Pjotr Prins 5 years ago
- API: fix returned record to include original metadata Pjotr Prins 5 years ago
- Rename Pjotr Prins 5 years ago
- mapping: no longer requires specimen file for genbank output Pjotr Prins 5 years ago
- Removing refs. No point in guessing terms Pjotr Prins 5 years ago
- mapping sample_species using regex Pjotr Prins 5 years ago
- Started on normalization Pjotr Prins 5 years ago
- genbank: specimen source Pjotr Prins 5 years ago
- genbank: more or less complete. Need to add collection method Pjotr Prins 5 years ago
- genbank: deal with host, sex and age Pjotr Prins 5 years ago
- genbank: technology parsing Pjotr Prins 5 years ago
- genbank: submitter info Pjotr Prins 5 years ago
- genbank: get authors Pjotr Prins 5 years ago
- Move reference code to different file so it does not break python Pjotr Prins 5 years ago
- GenBank date parsing Pjotr Prins 5 years ago