Tree @master (Download .tar.gz)
History of
bh20sequploader
/
main.py
@master
git clone https://klaus.systemreboot.net/bh20-seq-resource/
- Support uploading new metadata only Peter Amstutz 5 years ago
- Uploader script improvements Pjotr Prins 5 years ago
- Commented in uploader main.py Pjotr Prins 5 years ago
- fixed bugs in in index management and type conversion AndreaGuarracino 5 years ago
- local QC is optional AndreaGuarracino 5 years ago
- added control (locally and in the validation) that sample_id has to be the same in the metadata and in the FASTA header #103 AndreaGuarracino 5 years ago
- qc_fasta returns also the seq_type; verified that only one FASTA is sent at a time; code cleaning AndreaGuarracino 5 years ago
- updated parameter name AndreaGuarracino 5 years ago
- Improve uploader reporting. Peter Amstutz 5 years ago
- Give uploader an option to trust local validation (for batch imports) Peter Amstutz 5 years ago
- Uploader checks for duplicates Peter Amstutz 5 years ago
- Use minimap2 instead of clustalw for fasta QC Peter Amstutz 5 years ago
- Add bh20-seq-analyzer --print-status Peter Amstutz 5 years ago
- Add --skip-qc for faster batch import Peter Amstutz 5 years ago
- Adding --skip-qc Peter Amstutz 5 years ago
- Fix single arg upload Peter Amstutz 5 years ago
- Handle upload & assembly of gzipped, paired-end fastq Peter Amstutz 5 years ago
- Improved error output for the web uploader Pjotr Prins 5 years ago
- Web: debugging metadata submission Pjotr Prins 5 years ago
- Uploader: validate metadata first (it is faster) Pjotr Prins 5 years ago
- Handle running in a container with no username Peter Amstutz 5 years ago
- Work around CWL content size limit by chunking Peter Amstutz 6 years ago
- Working on NCBI import Peter Amstutz 6 years ago
- Add ShEx validation Peter Amstutz 6 years ago
- Inject path to find module bh20sequploader Pjotr Prins 6 years ago
- Add __init__.py and fix imports Peter Amstutz 6 years ago
- Closes #5 Pjotr Prins 6 years ago
- Fix up fasta/fastq validation Peter Amstutz 6 years ago
- Validate & propagate metadata Peter Amstutz 6 years ago
- Merge pull request #6 from uniqueg/fa_fq_validation Pjotr Prins (commit: GitHub) 6 years ago