Tree @master (Download .tar.gz)
History of
bh20sequploader
@master
git clone https://klaus.systemreboot.net/bh20-seq-resource/
- there can be two specimen terms AndreaGuarracino 5 years ago
- Yaml and ShEx changes lltommy 5 years ago
- added closed shapes AndreaGuarracino 5 years ago
- added missing _type: "@id" to the assembly_method field in the schema AndreaGuarracino 5 years ago
- Trying to fix the submitter shape, shex and yaml lltommy 5 years ago
- Proposed new technology shape/yaml structure lltommy 5 years ago
- Support uploading new metadata only Peter Amstutz 5 years ago
- Documenting and QC of YAML. Some conflicts discovered that need review lltommy 5 years ago
- Merge branch 'master' of https://github.com/arvados/bh20-seq-resource lltommy 5 years ago
- restricting specimen_source to obo:NCIT which would have prevented the ncbi taxon bug lltommy 5 years ago
- RDF: use URIs Pjotr Prins 5 years ago
- Fixed the License error (https!!) Pjotr Prins 5 years ago
- Uploader script improvements Pjotr Prins 5 years ago
- fixed sequence_assembly_method field description AndreaGuarracino 5 years ago
- Commented in uploader main.py Pjotr Prins 5 years ago
- sequence divergence to 5% for minimap2 in the FASTA quality control AndreaGuarracino 5 years ago
- show more information in the error messages AndreaGuarracino 5 years ago
- fixed bugs in in index management and type conversion AndreaGuarracino 5 years ago
- local QC is optional AndreaGuarracino 5 years ago
- added control (locally and in the validation) that sample_id has to be the same in the metadata and in the FASTA header #103 AndreaGuarracino 5 years ago
- qc_fasta returns also the seq_type; verified that only one FASTA is sent at a time; code cleaning AndreaGuarracino 5 years ago
- fixed local QC, modifying the regex for FASTA/FASTQ to be more general AndreaGuarracino 5 years ago
- updated parameter name AndreaGuarracino 5 years ago
- typos in the code; little code refactoring AndreaGuarracino 5 years ago
- reverted the relaxation on the location attribute AndreaGuarracino 5 years ago
- Relaxing the location attribute Pjotr Prins 5 years ago
- Report similarity == 0 Peter Amstutz 5 years ago
- Improve uploader reporting. Peter Amstutz 5 years ago
- Make license optional Peter Amstutz 5 years ago
- Make license optional for now Peter Amstutz 5 years ago