History of
scripts
/
create_sra_metadata
@master
git clone https://klaus.systemreboot.net/bh20-seq-resource/
- added abPOA workflow; typos AndreaGuarracino 5 years ago
- fixed typos in the integer cast AndreaGuarracino 5 years ago
- added a check on host_age AndreaGuarracino 5 years ago
- added a check on host_age AndreaGuarracino 5 years ago
- check empty strings AndreaGuarracino 5 years ago
- fix check date sra script AndreaGuarracino 5 years ago
- generation of dates a little more robust AndreaGuarracino 5 years ago
- to not create YAML files with date before 2019 December AndreaGuarracino 5 years ago
- managed the assembly_method in the scripts, doc, and the example templates AndreaGuarracino 5 years ago
- create_sra_metadata script doesn't trick the quality control about missing date aymore AndreaGuarracino 5 years ago
- new countries; updated genbank/sra scripts to manage more specimen sources AndreaGuarracino 5 years ago
- genbank and sra scripts more picky on the ontologies; added utils.py for shared functions AndreaGuarracino 5 years ago
- fixed bugs in in index management and type conversion AndreaGuarracino 5 years ago
- sra script re-enabled, ready for tests AndreaGuarracino 5 years ago
- added in the sra script an option to include only a subset of ids AndreaGuarracino 5 years ago
- sra script updated for managing more locations AndreaGuarracino 5 years ago
- synchronized the create_sra_metadata.py script with the latest updates AndreaGuarracino 5 years ago
- genbank/sra scripts update to be more generic with the specimen sources AndreaGuarracino 5 years ago
- genbank/sra scripts updated to read the dictionaries in a more general way AndreaGuarracino 5 years ago
- added a suffix to distinguish which script created the error/warning files AndreaGuarracino 5 years ago
- metadata with missing host_species are not created AndreaGuarracino 5 years ago
- an output file is created with the accessions for which no YAML file is created AndreaGuarracino 5 years ago
- updated metadata source AndreaGuarracino 5 years ago
- if the technology is not found, the YAML file is not created; managed longer species strings AndreaGuarracino 5 years ago
- renamed sra script; added seq technology in its additional information field if the term … AndreaGuarracino 5 years ago