Tree @master (Download .tar.gz)
- ..
- arvados-and-samtools-dockerfile
- abpoa.cwl
- arv-main.cwl
- collect-seqs.cwl
- collect-seqs.py
- dups2metadata.cwl
- dups2metadata.py
- from_sparql.cwl
- from_sparql.py
- merge-metadata.cwl
- merge-metadata.py
- odgi-build-from-xpoa-gfa.cwl
- odgi-build.cwl
- odgi_to_rdf.cwl
- pangenome-generate.cwl
- pangenome-generate_abpoa.cwl
- pangenome-generate_spoa.cwl
- query-to-gfa.cwl
- relabel-seqs.cwl
- relabel-seqs.py
- seqwish.cwl
- sort_fasta_by_quality_and_len.cwl
- sort_fasta_by_quality_and_len.py
- spoa.cwl
- testjob.yml
History of
workflows
/
pangenome-generate
/
pangenome-generate_spoa.cwl
@master
git clone https://klaus.systemreboot.net/bh20-seq-resource/
- added abPOA workflow; typos AndreaGuarracino 5 years ago
- added reversed_sorting parameter; typos AndreaGuarracino 5 years ago
- generalized spoa workflow AndreaGuarracino 5 years ago
- Fix typo. Give from_sparql more RAM. Peter Amstutz 5 years ago
- Add query-to-gfa workflow Peter Amstutz 5 years ago
- Fix output parameters Peter Amstutz 5 years ago
- Scaling pangenome generation Peter Amstutz 5 years ago
- Consolidate steps to scale graph generation workflow Peter Amstutz 5 years ago
- integrated the deduplication step in the sorting by quality and length script AndreaGuarracino 5 years ago
- added workflow to sort a multifasta by quality and length, and added the overall new pangenome generation workflow with SPOA AndreaGuarracino 5 years ago