Tree @master (Download .tar.gz)
History of
bh20sequploader
/
qc_fasta.py
@master
git clone https://klaus.systemreboot.net/bh20-seq-resource/
- Uploader script improvements Pjotr Prins 5 years ago
- sequence divergence to 5% for minimap2 in the FASTA quality control AndreaGuarracino 5 years ago
- show more information in the error messages AndreaGuarracino 5 years ago
- qc_fasta returns also the seq_type; verified that only one FASTA is sent at a time; code cleaning AndreaGuarracino 5 years ago
- typos in the code; little code refactoring AndreaGuarracino 5 years ago
- Report similarity == 0 Peter Amstutz 5 years ago
- minimap2 returns nothing when there is no alignment. Peter Amstutz 5 years ago
- Use minimap2 instead of clustalw for fasta QC Peter Amstutz 5 years ago
- Add --skip-qc for faster batch import Peter Amstutz 5 years ago
- Adding --skip-qc Peter Amstutz 5 years ago
- Fix qc_fasta bug closing stream. Peter Amstutz 5 years ago
- Better invalid sequence QC handling Peter Amstutz 5 years ago
- Handle upload & assembly of gzipped, paired-end fastq Peter Amstutz 5 years ago
- Improved error output for the web uploader Pjotr Prins 5 years ago
- Use subprocess invocation is backwards compatible with Python 3.5 Peter Amstutz 5 years ago
- Call clustalw to compare sequence to reference Peter Amstutz 5 years ago
- Fix swapped fasta/fastq Peter Amstutz 6 years ago
- Add qc_fasta Peter Amstutz 6 years ago