Tree @master (Download .tar.gz)
History of
workflows
@master
git clone https://klaus.systemreboot.net/bh20-seq-resource/
- Add comment Pjotr Prins 5 years ago
- Improve SPARQL query and comments Pjotr Prins 5 years ago
- genbank: sparql-fetch-ids Pjotr Prins 5 years ago
- sparql: rename file Pjotr Prins 5 years ago
- genbank: started on SPARQL fetcher Pjotr Prins 5 years ago
- genbank: pseudo workflow Pjotr Prins 5 years ago
- genbank: header Pjotr Prins 5 years ago
- genbank: split script Pjotr Prins 5 years ago
- genbank: moving script into workflow space Pjotr Prins 5 years ago
- abPOA works better starting from shorter sequences AndreaGuarracino 5 years ago
- added abPOA workflow; typos AndreaGuarracino 5 years ago
- added reversed_sorting parameter; typos AndreaGuarracino 5 years ago
- generalized spoa workflow AndreaGuarracino 5 years ago
- Give from_sparql more keep cache. Peter Amstutz 5 years ago
- Fix typo. Give from_sparql more RAM. Peter Amstutz 5 years ago
- Add query-to-gfa workflow Peter Amstutz 5 years ago
- Make collect-seqs skip bad inputs. Peter Amstutz 5 years ago
- Use arvados uuids for RDF subjects. Peter Amstutz 5 years ago
- Make resource link work for both portable data hashes and sample id Peter Amstutz 5 years ago
- Make it so "pangenome analysis" only runs collect-seqs. Peter Amstutz 5 years ago
- Rename schema param to metadataSchema Peter Amstutz 5 years ago
- Extract subset of the all-sequences fasta by running a sparql query. Peter Amstutz 5 years ago
- script for processing the metadata of the ESR samples; moved delete_entries_on_arvados script in scripts directory AndreaGuarracino 5 years ago
- increased the quality filter threshold AndreaGuarracino 5 years ago
- added script to remove entries on Arvados AndreaGuarracino 5 years ago
- Increase RAM for odgi-build-from-spoa-gfa Peter Amstutz 5 years ago
- Increase RAM requirement for sort_fasta_by_quality_and_len Peter Amstutz 5 years ago
- Fix output parameters Peter Amstutz 5 years ago
- Scaling pangenome generation Peter Amstutz 5 years ago
- Consolidate steps to scale graph generation workflow Peter Amstutz 5 years ago