Tree @master (Download .tar.gz)
History of
workflows
@master
git clone https://klaus.systemreboot.net/bh20-seq-resource/
- used builtin hashlib md5 for the deduplication step AndreaGuarracino 5 years ago
- integrated the deduplication step in the sorting by quality and length script AndreaGuarracino 5 years ago
- added workflow to sort a multifasta by quality and length, and added the overall new pangenome generation workflow with SPOA AndreaGuarracino 5 years ago
- added spoa workflow in a low memory consumption mode AndreaGuarracino 5 years ago
- new workflow for odgi building from spoa gfa AndreaGuarracino 5 years ago
- Merge pull request #85 from AndreaGuarracino/patch-18 LLTommy (commit: GitHub) 5 years ago
- Adjust QC filter and relabel output sequence with sample_id Peter Amstutz 5 years ago
- removed double sorting Andrea Guarracino (commit: GitHub) 5 years ago
- tweaks for proper graph browser output Michael R. Crusoe 5 years ago
- update tool sub repo Michael R. Crusoe 5 years ago
- Can have list of sequence labels to exclude from combined fasta Peter Amstutz 5 years ago
- Workflow fixes Peter Amstutz 5 years ago
- Merge pull request #49 from mr-c/add_pangenome_browser_prep Peter Amstutz (commit: GitHub) 5 years ago
- preserve the directory layout of segmentation.py Michael R. Crusoe 5 years ago
- move some tools into the shared repo Michael R. Crusoe 5 years ago
- bump jerven/spodgi image to 0.0.6 Peter Amstutz 5 years ago
- add pangenome browser prep Michael R. Crusoe 5 years ago
- Increase RAM for minimap2 Peter Amstutz 5 years ago
- Set a RAM requirement on odgi_to_rdf to influence it to run on c5 Peter Amstutz 5 years ago
- Set verison tag on spodgi container image Peter Amstutz 5 years ago
- Update spodgi docker image Peter Amstutz 5 years ago
- Increase ram requirement for minimap2 Peter Amstutz 6 years ago
- Workaround CWL limit by chunking file list Peter Amstutz 6 years ago
- Work around CWL content size limit by chunking Peter Amstutz 6 years ago
- Add readsMergeDedup.fasta to output Peter Amstutz 6 years ago
- Make sure there is a newline in relabeled fasta (but no blank lines) Peter Amstutz 6 years ago
- Better handling of duplicate sequences Peter Amstutz 6 years ago
- Relabel sequences to match metadata subjects. Peter Amstutz 6 years ago
- Move workflows into main repo Peter Amstutz 6 years ago